Below are links to data and codes associated with my publications. I will frequently update this page because transparency is essential to the scientific process.
Datasets:
Porites macrobioerosion across the Pacific Ocean (summary)
Porites macrobioerosion and calcification across the Pacific Ocean (individual core data)
Pacific coral reef seawater chemistry
Dongsha Atoll water temperature (subset)
Dongsha Atoll water temperature (.mat file with full dataset)
Dongsha Atoll ecological surveys
Dongsha Atoll coral calcification rates
Dongsha Atoll seawater chemistry and community metabolism
Palau Porites dissepiments frequency and calcification rates
Palau and Palmyra Atoll dissepiment spacing time series
Pacific and Red Sea coral skeletal geochemistry
Codes and Resources:
Raman spectra of marine calcifiers (Zenodo community with data and code from all our Raman papers)
Boron systematics of aragonite (MATLAB and R codes to calculate calcification fluid carbonate chemistry from B/Ca and boron isotope measurements, with uncertainties)
coralCT software analysis code (MATLAB) for analyses of coral calcification and bioerosion rates
Tracing seawater parcels on coral reef flats for community metabolism studies (equation derivations and example code from Dongsha Atoll paper)
Porites macrobioerosion across the Pacific Ocean (summary)
Porites macrobioerosion and calcification across the Pacific Ocean (individual core data)
Pacific coral reef seawater chemistry
Dongsha Atoll water temperature (subset)
Dongsha Atoll water temperature (.mat file with full dataset)
Dongsha Atoll ecological surveys
Dongsha Atoll coral calcification rates
Dongsha Atoll seawater chemistry and community metabolism
Palau Porites dissepiments frequency and calcification rates
Palau and Palmyra Atoll dissepiment spacing time series
Pacific and Red Sea coral skeletal geochemistry
Codes and Resources:
Raman spectra of marine calcifiers (Zenodo community with data and code from all our Raman papers)
Boron systematics of aragonite (MATLAB and R codes to calculate calcification fluid carbonate chemistry from B/Ca and boron isotope measurements, with uncertainties)
coralCT software analysis code (MATLAB) for analyses of coral calcification and bioerosion rates
Tracing seawater parcels on coral reef flats for community metabolism studies (equation derivations and example code from Dongsha Atoll paper)
Links to separate CodeOcean capsules:
Acclimatization of massive reef-building corals to consecutive heatwaves
Coral resistance to ocean acidification linked to increased calcium at the site of calcification
The origin and role of organic matrix in coral calcification: insights from comparing coral skeleton and abiogenic aragonite
Revisiting the boron systematics of aragonite and their application to coral calcification
Coral calcifying fluid aragonite saturation states derived from Raman spectroscopy
Boron systematics of aragonite
Experimental determination of factors controlling U/Ca of aragonite: implications for interpreting coral skeleton
Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification
Coral Sr-U thermometry
Acclimatization of massive reef-building corals to consecutive heatwaves
Coral resistance to ocean acidification linked to increased calcium at the site of calcification
The origin and role of organic matrix in coral calcification: insights from comparing coral skeleton and abiogenic aragonite
Revisiting the boron systematics of aragonite and their application to coral calcification
Coral calcifying fluid aragonite saturation states derived from Raman spectroscopy
Boron systematics of aragonite
Experimental determination of factors controlling U/Ca of aragonite: implications for interpreting coral skeleton
Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification
Coral Sr-U thermometry
